Package index • pedtricks

Pedigree statistics

ped_stats(): Calculates a range of statistics of pedigrees

summary(<ped_stats>): Post-processes output from ped_stats

Pedigree visualization

draw_ped(): Produce a graphical representation of a pedigree

draw_pedA(): Produce a graphical representation of the relatedness matrix of a pedigree

ggpedigree(): ggpedigree: Plotting tool for simple and complex pedigrees.

plot(<ped_stats>): Plot output from ped_stats

Pedigree manipulation

convert_ped(): Converts a pedigree with individuals specified as factors to a numeric pedigree

fix_ped(): Manipulating pedigrees to prepare them for requirements of subsequent analyses Prepares a pedigree to conform with requirements of many softwares used in quantitative genetic analysis, as well as for many of the functions in pedtricks.

Pedigree simulations

genome_sim(): A function to simulate QTL and/or SNP data.

micro_sim(): Simulates microsatellite data across a pedigree.

phen_sim(): A function to simulated phenotypic data

Pedigree example

gryphons: Example dataset for pedtricks examples and tutorial

WarblerG: Seychelles Warbler Genotypes