Allele Frequencies

Extracts allele frequencies from genotype data

Usage

extractA(G, marker.type = "MSW")

Arguments

G

data frame or list of genotype objects

marker.type

"MSW" or "MSC" for co-dominant markers with Wang's (2004) model of genotyping error or CERVUS's model of genotyping error (Marshall, 1998) or "AFLP" for dominant markers.

Value

list of allele frequencies at each loci

Author

Jarrod Hadfield j.hadfield@ed.ac.uk

Examples

# \donttest{
data(WarblerG)

A <- extractA(WarblerG)
A[[1]]
#>        272        279        284 
#> 0.50822368 0.45230263 0.03947368 
# }